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coarse grain forcefield for biomolecules skip to content jump to main navigation and login nav view search navigation about downloads tutorials publications contact forum login form username password remember me forgot your password? forgot your username? create an account newest downloads martini 3 open-beta rna simulated evaporation and scattering improved gangliosides lipopolysaccharides cyclodextrins triton tx-100 parameters polyelectrolytes example mdp gromacs 5.x psii cofactors automated topology builder thylakoid membrane kit plasma membrane ceramide parameters physisorption on graphite backward insane angle potentials glycolipids example input gromacs 4.x fusion peptides bolalipids mechanosensitive channel amyloid fibrils rendering bonds vmd saccharides polyethyleneglycol (peg) 3d pressure code morphoscanner: protein‐peptide structural characterization hot martini papers morphoscanner: protein‐peptide structural characterization oil-in-water emulsions pip2 induced binding of ferm martini with adaptive boundaries comparing shocked water states dna binding to supramolecular polymer ceramide cubic phases in skin layers calcein formation extracellular vesicles martini chocolate ! cholesterol induced nanoclusters lipid access p-glycoprotein nanoparticles for drug delivery osmotic pressure as target chol binding dopamine transporter lipid binding sites ps ii bilayer composition fluctuations crowded ion channels antibiotic efflux pump pip2 induced gtpase complex blood-brain barrier tight junctions stress propagation membrane scaffolded membranes ensemble dynamics tm helix dimers pycgtool golden rings & strings gomartini gold nanoparticles rotational diffusion of proteins supramolecular polymer self-assembly cholesterol-lipid phase diagram pufa and domains lipohobic effect membrane insertion tc toxin domain registration i domain registration ii domain registration iii protein induced membrane stifness diverging lipid diffusion anestetic binding sites ion channel lipid extraction by nanoparticles membrane saturation sensor gm mediated protein clustering liposomes from nanobubbles surface wetting by vesicles e-field induced bilayer curvature club-martini: capri targets polarizable lipids walp effects lipid domains triton tx-100 liposome spreading multiscale martini heterojunction solar cells dengue virion envelope surface tension review peptide curvature sensing polyelectrolytes pss & pdama dry martini dendrimers bicelles & nanodiscs osmolyte effect amyloid aggregation receptor proteins plasma membrane dry martini poly(ethylene oxide) graphene-oxide monolayer rupture testing polarizable water peptide based nanocarrier martini atb qm/mm/cg influenza virion high-throughput peptide assembly sugars alter membrane organization reshaping membrane domains microemulsion morphology membrane curvature protein-ligand binding polymer scaffold carbon nanotube promiscuous phytochemicals adressing martini solvents peg/calcium membrane fusion bilayer rigidity profile surface active ionic liquids rss - news rss news feed latest news formation of smalps details last updated: friday, 22 june 2018 19:54 experimental characterization of membrane proteins often requires their solubilization. a recent approach is to use styrene maleic acid (sma) copolymers to isolate membrane proteins in nanometer-sized membrane discs, so called sma lipid particles (smalps). the approach has the advantage of allowing direct extraction of proteins, keeping their native lipid environment. despite the growing popularity of using smalps, the molecular mechanism behind the process remains poorly understood. in this paper, we unravel the molecular details of the nanodisc formation based on martini simulations: m. xue, l. cheng, i. faustino, w. guo, s.j. marrink , biophys. j . , 2018, online . martini 3 open-beta release details last updated: monday, 02 july 2018 10:44 we gladly announce the release of the open beta version of martini 3. this first glance of the new martini includes all the necessary files to perform cg simulations of phospholipid bilayers and proteins . in the near future, new models for other molecules will also be included in this open beta. so, continue visiting our website to be updated with the news. the main goal of this release is to get feedback from the scientific community. reporting problems in our forum will help us in the improvement of the force field, which also increase the chances of your favorite system be properly working in the near future. good feedback is also welcome for the sake of the developers. be aware, the parametrization is still on-the-fly, which means that the cg models used (from the interaction between beads to the bonded parameters) can/will change until the release and publication of the definitive version. you can find the open-beta input parameters here. lipid fingerprints details last updated: thursday, 14 june 2018 10:29 the large variety of lipids in the plasma membrane gives rise to very complex protein-lipid interactions. these interactions, coined fingeprints, are analyzed in the following paper, based on the martini model (what else?): v. corradi et al. lipid–protein interactions are unique fingerprints for membrane proteins. acs cent. sci., asap, 2018. doi:10.1021/acscentsci.8b00143 curvature-induced lipid sorting details last updated: tuesday, 12 june 2018 06:56 by pulling tethers from realistic plasma membranes we have been able to identify to what extent lipids are being sorted as a result of curvature. we show that some lipids are depleted from highly curved regions, whereas other are being enriched. but everything also depends on the pulling direction, as the plasma membrane is asymmetric. for details, see the paper which is now available online in the new flagship journal of wiley: s. baoukina, h.i. ingólfsson, s.j. marrink, d.p. tielema n. curvature‐induced sorting of lipids in plasma membrane tethers. advanced theory and simulations, https://doi.org/10.1002/adts.201800034 . martini 3.0 before the summer details last updated: friday, 29 june 2018 18:13 the long awaited (beta) release date of the new martini 3.0 model is finally there: july 1st, 2018. less than 1 week to go, and all your martini worries will be gone ! page 1 of 14 start prev 1 2 3 4 5 6 7 8 9 10 next end "and when that first martini hits the liver like a silver bullet, there is a sigh of contentment that can be heard in dubuque." - 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Domain name: cgmartini.nl
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Willemstraat 15
4811AJ BREDA
Netherlands

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Willemstraat 15
4811AJ BREDA
Netherlands
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